fastp_to_bwa

Workflow Description
a simple workflow from fastp to bwa. fastp to process raw data to clean data. bwa to align paired fastq file to sam.
Macros Interface
Macro Name Description
R1 r1 fastq file
R2 r2 fastq file
THREAD bwa thread
REF path of reference genome
FASTP path of fastp bin
SAMPLE_NAME sample name
BWA path of bwa bin
ID sample id
LIBRARY sample library
PLATFORM sequencing platform,eg Ilumina

Author

Zhang Yu

Email

zhangy@sccas.cn